PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G02580.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 201aa    MW: 22443.3 Da    PI: 10.7863
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G02580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS51.61.7e-16108179255318
             GRAS 255 erflealeyysalfdsleaklpres........eerikvErellgreivnvvacegaerrerhetlekWrer 318
                      +rf+eal++y+a+fdsl+a ++++s        +er+ vEr+++g+ei+ v+   ga+rrerh +l++W ++
  OBART11G02580.1 108 ARFCEALHHYAAVFDSLDAAAAATSaasrlwspDERAQVERVVVGEEIKGVLLRDGAHRRERHDRLRQWARA 179
                      79***************99988888888999999***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.7121201IPR005202Transcription factor GRAS
PfamPF035146.0E-14108179IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MFSGTDASSP ELSLCSPYGP WTQGRSPTEE LGLALLEDWA HGEGHALPRA RHGPRRRRRR  60
VQAITDALID PSVYLDRRSV RAARRGFFEL SPFPKVAFVV GNRAIVEARF CEALHHYAAV  120
FDSLDAAAAA TSAASRLWSP DERAQVERVV VGEEIKGVLL RDGAHRRERH DRLRQWARAW  180
RWPGSPACRS ATPPSGRGTT W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14859RARHGPRRRRRR
25059RHGPRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-147CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619131.14e-45scarecrow-like protein 3
TrEMBLA0A0D3HI201e-141A0A0D3HI20_9ORYZ; Uncharacterized protein
STRINGOBART11G02580.11e-142(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-06scarecrow-like 3