PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G03540.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 274aa    MW: 28474.6 Da    PI: 8.5005
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G03540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.3e-10124172149
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                      eke kr rr   NRe+Ar   +R++a  +eL++kv+ L+++N+++kk +
  OBART11G03540.1 124 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSQNETMKKVA 172
                      89********************************************854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-5122170No hitNo description
PfamPF001703.0E-8124171IPR004827Basic-leucine zipper domain
SMARTSM003382.1E-6124189IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-5128170No hitNo description
CDDcd147025.14E-9129170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSDHSSSDGQ RQCRRRGVGV DVELDAAMAL ADMAGAAPGQ PEASPPPHAT QEAAAAAVAK  60
GEQEDEAEMA STRLSLELGK VGIQSSSPCS SSSSAGHPAM QPAAAATAAP GYGPRPRHML  120
TEAEKEAKRL RRVLANRESA RQTILRRQAI RDELARKVAD LSSQNETMKK VAIRTIKKAA  180
PYQEQPTSSP GGGTAEEDTD DDPCSLTLAI DVDKRSAPGA GGSAAGAGQH ASISDREKAT  240
AAAEARKRRK ELTKLKQMHG GGGSSRPGGG GEHW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879050.0AK287905.1 Oryza sativa Japonica Group cDNA, clone: J065211O07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615785.13e-79uncharacterized protein LOC4349815
TrEMBLA0A0D3HID80.0A0A0D3HID8_9ORYZ; Uncharacterized protein
STRINGOBART11G03540.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.12e-09bZIP family protein