PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G03800.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 384aa    MW: 41839.3 Da    PI: 10.6113
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G03800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.2e-102973341954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  OBART11G03800.1 297 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 334
                      664559******************************88 PP
2BELL993.7e-32142203162
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFr 62 
                      erqelq+kk kL+++l+eV++rY+qy++q+q+v++sFeavag gsa+ Yt+lAl++iSr+Fr
  OBART11G03800.1 142 ERQELQMKKGKLINMLDEVEQRYRQYHQQMQVVVASFEAVAGGGSARTYTALALRTISRQFR 203
                      79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-34106207IPR006563POX domain
PfamPF075264.2E-5114135IPR006563POX domain
PfamPF075268.0E-31137203IPR006563POX domain
PROSITE profilePS5007112.228275338IPR001356Homeobox domain
CDDcd000863.52E-13278339No hitNo description
SMARTSM003891.2E-9278342IPR001356Homeobox domain
SuperFamilySSF466891.54E-17279345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-29281344IPR009057Homeodomain-like
PfamPF059201.3E-18295334IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQSGTDGL QTLYLMNPSY AGYGDAAAAP GAAANMMLLN SAVTSMTPVS  60
FGHQPSPSSS SAAQHFVGIP LQAPPASGYN LWTAGDEGKY LQAVAQGAAS QGQMVMSSKY  120
LKAAQELLDE VVSVSKGMST AERQELQMKK GKLINMLDEV EQRYRQYHQQ MQVVVASFEA  180
VAGGGSARTY TALALRTISR QFRWSSGTGS TTGRCRGWRR RSRRRRGPGR RRLTRRWRCA  240
PSHGGCGRTV GSRLRYIDHQ LRQQRALQQL GMMQSSAWRP QRGLPERSVS ILRAWLFEHF  300
LHPYPKDSDK IMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYLEETKD QDGGGGGAGD  360
EGSKPGGSKG GGAGVNGGVN VKSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17284341158Homeobox protein Meis1
4xrs_B6e-17284341158Homeobox protein Meis1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218231RRRSRRRRGPGRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332171e-134AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149671e-134AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-134CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663234.11e-169PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_015616922.11e-167BEL1-like homeodomain protein 1
RefseqXP_015616923.11e-167BEL1-like homeodomain protein 1
RefseqXP_015616924.11e-167BEL1-like homeodomain protein 1
RefseqXP_015616925.11e-167BEL1-like homeodomain protein 1
SwissprotQ9SIW12e-87BLH7_ARATH; BEL1-like homeodomain protein 7
SwissprotQ9SJ562e-85BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0D3HIH10.0A0A0D3HIH1_9ORYZ; Uncharacterized protein
STRINGOBART11G03800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.17e-77BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]