PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G03800.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 255aa    MW: 28797.5 Da    PI: 11.4278
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G03800.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.4e-101421791954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  OBART11G03800.2 142 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 179
                      554459******************************98 PP
2BELL76.63.7e-251481562
             BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFr 62
                     +l+eV++rY+qy++q+q+v++sFeavag gsa+ Yt+lAl++iSr+Fr
  OBART11G03800.2  1 MLDEVEQRYRQYHQQMQVVVASFEAVAGGGSARTYTALALRTISRQFR 48
                     9**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.4E-22148IPR006563POX domain
PROSITE profilePS5007112.228120183IPR001356Homeobox domain
CDDcd000862.21E-12123184No hitNo description
SMARTSM003891.2E-9123187IPR001356Homeobox domain
SuperFamilySSF466897.7E-18124190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-29126189IPR009057Homeodomain-like
PfamPF059207.0E-19140179IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLDEVEQRYR QYHQQMQVVV ASFEAVAGGG SARTYTALAL RTISRQFRWS SGTGSTTGRC  60
RGWRRRSRRR RGPGRRRLTR RWRCAPSHGG CGRTVGSRLR YIDHQLRQQR ALQQLGMMQS  120
SAWRPQRGLP ERSVSILRAW LFEHFLHPYP KDSDKIMLAK QTGLTRSQVS NWFINARVRL  180
WKPMVEEMYL EETKDQDGGG GGAGDEGSKP GGSKGGGAGV NGGVGTAHTD SNNLMDHWYR  240
TVCAITEQSL NMESI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17129186158Homeobox protein Meis1
4xrs_B4e-17129186158Homeobox protein Meis1
5bng_A4e-17129187159Homeobox protein Meis2
5bng_B4e-17129187159Homeobox protein Meis2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16376RRRSRRRRGPGRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546391e-133AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02.
GenBankAK3550781e-133AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22.
GenBankAK3665361e-133AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18.
GenBankAK3743451e-133AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616922.12e-93BEL1-like homeodomain protein 1
RefseqXP_015616923.12e-93BEL1-like homeodomain protein 1
RefseqXP_015616924.12e-93BEL1-like homeodomain protein 1
RefseqXP_015616925.12e-93BEL1-like homeodomain protein 1
SwissprotQ9SIW12e-74BLH7_ARATH; BEL1-like homeodomain protein 7
SwissprotQ9SJ562e-73BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0D3HIH20.0A0A0D3HIH2_9ORYZ; Uncharacterized protein
STRINGOBART11G03800.11e-163(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.26e-66BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]