PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G05410.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 244aa    MW: 26443.3 Da    PI: 8.501
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G05410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.35e-19176209134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ +  +
  OBART11G05410.1 176 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 209
                      *****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.04E-14169222No hitNo description
PROSITE profilePS5011413.231170208IPR000679Zinc finger, GATA-type
SMARTSM004017.2E-18170224IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.9E-16174209IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.19E-13175223No hitNo description
PfamPF003207.9E-17176210IPR000679Zinc finger, GATA-type
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MPKPTPSSSS FLDFTGGVDG DDDDPSCPFE GLCCPDDPLD QVLNFDSSDF GHWDHAAAPS  60
SSATTTPSDS SLSSPPSLTS AFPRIARVFP SRTKPRRRCT LRRQHWSLIC PLHLVPVAAA  120
AAADDDDAAA RGKSISELNA SAAADAPSTN DRGGGSYHRR VVGRQRNRQV RKDRRCSHCG  180
TSETPQWRMG PDGPGTLCNA CGIRSKMDRL LPEYRPSTSP GFGSDGYSNR HSKVVKLREK  240
KMRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286440.0AC128644.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0009F15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HJ281e-176A0A0D3HJ28_9ORYZ; Uncharacterized protein
STRINGOBART11G05410.11e-177(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.16e-25GATA transcription factor 7