PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G08950.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 174aa    MW: 18734.6 Da    PI: 9.6511
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G08950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP241.2e-07301064189
              TCP  41 fdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg......................k 89 
                        ++sk+ieWL+  a +ai++l ++          s    s   +++++s++++s+s+                       
  OBART11G08950.1  30 RRQPSKAIEWLICTAAAAIDALSSLdcsfvipnaaS----SPPGDDAEVSTSKTSKSSvlsltnallgtqlgctwdmlaiL 106
                      569**********************99988754331....23333333333333333345555555666666666666541 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-629111IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAHAATTTSC KITTIRVAVH GARRHRRFAR RQPSKAIEWL ICTAAAAIDA LSSLDCSFVI  60
PNAASSPPGD DAEVSTSKTS KSSVLSLTNA LLGTQLGCTW DMLAILQAQP IETEERIQKA  120
AAALLEASNR SIGERRTAAA TWWPVGTLSI SFLPTFLLPL PSRNFWHLPP PVFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139531e-113AL713953.3 Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-113AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX5369671e-113BX536967.2 Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HKC31e-122A0A0D3HKC3_9ORYZ; Uncharacterized protein
STRINGOBART11G08950.11e-122(Oryza barthii)