PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G13160.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 484aa    MW: 52636.6 Da    PI: 9.4596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G13160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.8e-1199122326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C++++rtG C++G +CkF+H+
  OBART11G13160.1  99 EPDCSYYMRTGLCRFGMTCKFNHP 122
                      789********************8 PP
2zf-CCCH38.71.7e-12144168327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OBART11G13160.1 144 QPECQYYLKTGTCKFGATCKFHHPR 168
                      799********************96 PP
3zf-CCCH36.58.4e-12190214327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  OBART11G13160.1 190 EKECAYYLRTGQCKFGSTCKFHHPQ 214
                      679********************97 PP
4zf-CCCH39.41e-12351376227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OBART11G13160.1 351 DQPECQFYMKTGDCKFGAVCKFHHPK 376
                      689*********************96 PP
5zf-CCCH38.32.3e-12396422127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OBART11G13160.1 396 PGEPICTFYSRYGICKFGPNCKFDHPM 422
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.86896124IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-496123IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-899122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5101124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4102123IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6144170IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5147169IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5187214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6187215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619187215IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9190214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4193213IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5349376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511349377IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9351376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5352377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4355376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6394421IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7395422IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178395423IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9397422IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4400420IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MTWRPLVILS GARPGPSPSA VKAPVDWVGW RGRAAVKKSG EGRRGTKTTG CPNGDASFLS  60
FPFLPPSSAS ASSSSALTPA RMNLGEAMEA GPYPERIGEP DCSYYMRTGL CRFGMTCKFN  120
HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA TCKFHHPREK AAMATRVQLN  180
ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV AVRGSVYSPG QSVTSPSQHT  240
YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV PGWNPYAAQI GSSSSDDQQR  300
TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV QRESIFPERP DQPECQFYMK  360
TGDCKFGAVC KFHHPKERII PTPNCALSSL GLPLRPGEPI CTFYSRYGIC KFGPNCKFDH  420
PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR SRRITHSDSQ QIPSGERGTE  480
REAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.20.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D3HLQ60.0A0A0D3HLQ6_9ORYZ; Uncharacterized protein
STRINGOBART11G13160.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-152zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]