PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART11G14550.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 602aa MW: 64506.1 Da PI: 7.9789

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART11G14550.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.6	1e-113	261	601	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 lv+lLl+cA+ vs+gd+ +a + L l+ asp + + +Rl +f+ ALaarl+ +++ + ++P++k OBART11G14550.1 261 LVHLLLACADLVSKGDHPAALRHLHLLRRVASPLRrlHAARRL--HFADALAARLVP--------SVVRPPT----------------ACPYIK 328 68*****************************9944466665..8******9........2233333................6* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 f+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+ +++etg+ La++A++l+vpfef++ +a+rl OBART11G14550.1 329 FAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PPAAVRETGRHLASLAASLRVPFEFHAAAADRL 418 *****************************************************....99*********************9999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e l++ +L+ + gEalaVn v +lhr++ +s+ + +L+++++ Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p+es OBART11G14550.1 419 ERLRPAALHRRVGEALAVNAVNRLHRVP------SSHLPPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLEALHYYSAIFDSLDATFPAEST 506 *************************9......445566************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +r+kvE+ ll++ei+nvvacegaer++rhe+le+Wr+ +e GF++vpls a+ q + ll ++ +dgyr+ e+sg+l+lgW+dr+++++SaW OBART11G14550.1 507 ARMKVEQCLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGaGDGYRLTEDSGCLLLGWQDRAIIAASAW 600 ******************************************************************************************** PP GRAS 374 r 374 r OBART11G14550.1 601 R 601 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.737	235	580	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-111	261	601	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MGTTTMLNAA DMAGGGAKLQ QQQAPTSPTA SVSESNIVAS TASADPEAND ALAGLQALRF 60 DGGGGGGDID DVEIQSPDIA LWESIFADQI GVSGAGADFL LSMSSAAASP RRDFMACSPK 120 RDYMVTTSSP KRDYMVTSSP KRDYMVSSPK REYMVTSPRR EMATSPRRAT FSNLYTSSHG 180 GGGGGGHHLH HQSYVHGGGM EGGGGGHGAQ PQYGGLAGHG KGKAQSPLHK HQMAADSSLH 240 SMLGSVIQSE AEQEQDSGLQ LVHLLLACAD LVSKGDHPAA LRHLHLLRRV ASPLRRLHAA 300 RRLHFADALA ARLVPSVVRP PTACPYIKFA HFTANQAIFE AFHGEDRVHV VDLDILQGYQ 360 WPAFLQALAA RPGGPPTLRL TGVGHPPAAV RETGRHLASL AASLRVPFEF HAAAADRLER 420 LRPAALHRRV GEALAVNAVN RLHRVPSSHL PPLLSMIRDQ APKIITLVEQ EAAHNGPYFL 480 GRFLEALHYY SAIFDSLDAT FPAESTARMK VEQCLLAPEI RNVVACEGAE RVARHERLER 540 WRRLMEGRGF EAVPLSAAAV GQSQVLLGLY GAGDGYRLTE DSGCLLLGWQ DRAIIAASAW 600 RC

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MGTTTMLNAA DMAGGGAKLQ QQQAPTSPTA SVSESNIVAS TASADPEAND ALAGLQALRF  60
DGGGGGGDID DVEIQSPDIA LWESIFADQI GVSGAGADFL LSMSSAAASP RRDFMACSPK  120
RDYMVTTSSP KRDYMVTSSP KRDYMVSSPK REYMVTSPRR EMATSPRRAT FSNLYTSSHG  180
GGGGGGHHLH HQSYVHGGGM EGGGGGHGAQ PQYGGLAGHG KGKAQSPLHK HQMAADSSLH  240
SMLGSVIQSE AEQEQDSGLQ LVHLLLACAD LVSKGDHPAA LRHLHLLRRV ASPLRRLHAA  300
RRLHFADALA ARLVPSVVRP PTACPYIKFA HFTANQAIFE AFHGEDRVHV VDLDILQGYQ  360
WPAFLQALAA RPGGPPTLRL TGVGHPPAAV RETGRHLASL AASLRVPFEF HAAAADRLER  420
LRPAALHRRV GEALAVNAVN RLHRVPSSHL PPLLSMIRDQ APKIITLVEQ EAAHNGPYFL  480
GRFLEALHYY SAIFDSLDAT FPAESTARMK VEQCLLAPEI RNVVACEGAE RVARHERLER  540
WRRLMEGRGF EAVPLSAAAV GQSQVLLGLY GAGDGYRLTE DSGCLLLGWQ DRAIIAASAW  600
RC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-76	253	600	10	378	Protein SCARECROW
5b3h_A	3e-76	268	600	25	377	Protein SCARECROW
5b3h_D	3e-76	268	600	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616711.1	0.0	DELLA protein RHT-1
Swissprot	G7L166	1e-178	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A0D3HM59	0.0	A0A0D3HM59_9ORYZ; Uncharacterized protein
STRING	OBART11G14550.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9221	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-89	RGA-like 1

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]