PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G14730.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 102aa    MW: 11694.5 Da    PI: 8.8366
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G14730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.32e-1213941294
              NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
                      elv +yL + + + +l+  ++i+++di++++P d+  + +++++  +fF++++kk++ ++ +n a+  g+W+   ++  v++
  OBART11G14730.1 13 GELVINYLYQCAIQMSLPY-DFITDIDILHHNPLDIVPTRQEKKNGKHFFTRKEKKHHGDNCRNHAAGVGFWRLASTEALVYK 94
                     49****************9.99**************63445667799*********99999999999******9988888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.2962102IPR003441NAC domain
SuperFamilySSF1019411.18E-131497IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MAGPQVCVPT HYGELVINYL YQCAIQMSLP YDFITDIDIL HHNPLDIVPT RQEKKNGKHF  60
FTRKEKKHHG DNCRNHAAGV GFWRLASTEA LVYKNSVMAL IK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361502e-84AC136150.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0023F12, complete sequence.
GenBankAP0149672e-84AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.11e-29PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA0A0D3HM773e-72A0A0D3HM77_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J2A23e-72A0A0E0J2A2_ORYNI; Uncharacterized protein
STRINGORUFI11G15730.11e-50(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.13e-09NAC domain containing protein 94