PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G14740.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 256aa    MW: 27844.7 Da    PI: 8.8696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G14740.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.14.9e-213111351128
              NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                      ++++ek  yfF++++ k ++++r+nr+t++g+W++ g++k+v+ +  +        vg+++tL+fy g+++++e+t+W m+e+rl
  OBART11G14740.2  31 LTEREKGKYFFMQKEIKCPSSRRSNRITSKGFWRSAGSEKPVYYNqgG--GsdcmlVGMRRTLTFYFGNSRTAERTKWGMQEFRL 113
                      45678899***********************************98551..234566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.7111182IPR003441NAC domain
PfamPF023654.5E-1026113IPR003441NAC domain
SuperFamilySSF1019419.29E-2131123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MARVVLSTPI VNGATMHLPA VGMSHPTEGA LTEREKGKYF FMQKEIKCPS SRRSNRITSK  60
GFWRSAGSEK PVYYNQGGGS DCMLVGMRRT LTFYFGNSRT AERTKWGMQE FRLAGNGLSP  120
YPAMKHATGD GSKPPCNCAE TTIAKRNDGL SAVLRNVLAV TPLVETVVEP DGSWLICRIY  180
RTRQRALPVI TPPAIENARE IIIPPANGNA REAQVHFIDF LPQGSHIESS SPCSCIVGPS  240
LAEGSDESAG SVDQKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9401960.0FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-93NAC transcription factor 25
TrEMBLA0A0D3HM800.0A0A0D3HM80_9ORYZ; Uncharacterized protein
STRINGOBART11G14740.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.17e-17NAC domain containing protein 46