PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G16060.4
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 412aa    MW: 46699.8 Da    PI: 9.7809
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G16060.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.3e-13174258898
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++++ +++p   +++++++ e+   ++l + +  + ++++  +k+s++ ++t+GW+eF +a gL+ g+ vvFk    s+ + +v v++
  OBART11G16060.4 174 LTTGNQHYVRVPSAITRTYQLEDEQ--NVKLVTAHELEVNIRI--QKSSNKLYMTEGWEEFIEATGLQLGEYVVFKAL--SSSKIHVIVLN 258
                      56678888999********999766..6999999999999999..*******************************54..45555777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.103801.7E-361106IPR012301Malic enzyme, N-terminal domain
SuperFamilySSF532234.96E-322106No hitNo description
PfamPF003904.4E-294106IPR012301Malic enzyme, N-terminal domain
SMARTSM012744.6E-144122IPR012301Malic enzyme, N-terminal domain
SuperFamilySSF1019363.34E-15166261IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.926167260IPR003340B3 DNA binding domain
CDDcd100178.39E-8167258No hitNo description
Gene3DG3DSA:2.40.330.107.4E-15168261IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-4169260IPR003340B3 DNA binding domain
PfamPF023627.5E-11174255IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-12310406IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-9312409IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1315408IPR003340B3 DNA binding domain
PROSITE profilePS508638.318315412IPR003340B3 DNA binding domain
PfamPF023623.0E-7317408IPR003340B3 DNA binding domain
CDDcd100172.55E-7325399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004471Molecular Functionmalate dehydrogenase (decarboxylating) (NAD+) activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDLQERNERL FYKLLINNVE ELLPVVYTPR STGQSLFFRR PQGQEKMFEL LRNWPEESIQ  60
VIVVTDGERI LGLGDLGCQG MGIPVGKLAL YTALRGVRPS AVICVVKSAY SSKVRESLAA  120
GRRGHWHSHS APLLWLLPGY NYGSTDILHG QADHGKSTLP AIGMDPPIFS TVRLTTGNQH  180
YVRVPSAITR TYQLEDEQNV KLVTAHELEV NIRIQKSSNK LYMTEGWEEF IEATGLQLGE  240
YVVFKALSSS KIHVIVLNKN GHLRCPVPED ISESEAAPNR PAPSKRTVKE MHQAITEVKN  300
YIKDIAQFLH RSNKFDITTI NATFMKQDRV YFSKEFSRKY IAPLARRKTL KIKVQLAGHP  360
SSTMILHKST DDRYNLKAGW AHFAIKNNIE LGSLCIFHFY KTNQLQATID VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ou5_A2e-37110598213Malic enzyme
5ou5_B2e-37110598213Malic enzyme
5ou5_C2e-37110598213Malic enzyme
5ou5_D2e-37110598213Malic enzyme
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0738589e-78AK073858.1 Oryza sativa Japonica Group cDNA clone:J033072B12, full insert sequence.
GenBankAY4443389e-78AY444338.1 Oryza sativa (indica cultivar-group) cytosolic NADP malic enzyme mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HMP50.0A0A0D3HMP5_9ORYZ; Uncharacterized protein
STRINGOBART11G16060.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-09B3 family protein