PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G16060.7
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 255aa    MW: 29175.6 Da    PI: 9.824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G16060.7genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-1317101898
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++++ +++p   +++++++ e+   ++l + +  + ++++  +k+s++ ++t+GW+eF +a gL+ g+ vvFk    s+ + +v v++
  OBART11G16060.7  17 LTTGNQHYVRVPSAITRTYQLEDEQ--NVKLVTAHELEVNIRI--QKSSNKLYMTEGWEEFIEATGLQLGEYVVFKAL--SSSKIHVIVLN 101
                      56678888999********999766..6999999999999999..*******************************54..45556777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-159104IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-810101No hitNo description
PROSITE profilePS5086310.92610103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-1511104IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-412103IPR003340B3 DNA binding domain
PfamPF023623.1E-111798IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-13153249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-9155252IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.318158255IPR003340B3 DNA binding domain
SMARTSM010191.1158251IPR003340B3 DNA binding domain
PfamPF023621.2E-7159251IPR003340B3 DNA binding domain
CDDcd100171.10E-7168242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004471Molecular Functionmalate dehydrogenase (decarboxylating) (NAD+) activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MPDAIGMDPP IFSTVRLTTG NQHYVRVPSA ITRTYQLEDE QNVKLVTAHE LEVNIRIQKS  60
SNKLYMTEGW EEFIEATGLQ LGEYVVFKAL SSSKIHVIVL NKNGHLRCPV PEDISESEAA  120
PNRPAPSKRT VKEMHQAITE VKNYIKDIAQ FLHRSNKFDI TTINATFMKQ DRVYFSKEFS  180
RKYIAPLARR KTLKIKVQLA GHPSSTMILH KSTDDRYNLK AGWAHFAIKN NIELGSLCIF  240
HFYKTNQLQA TIDVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HMP80.0A0A0D3HMP8_9ORYZ; Uncharacterized protein
STRINGOBART11G16060.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.15e-10B3 family protein