PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G16060.8
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 249aa    MW: 28590.9 Da    PI: 9.926
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G16060.8genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-131195898
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +++++ +++p   +++++++ e+   ++l + +  + ++++  +k+s++ ++t+GW+eF +a gL+ g+ vvFk    s+ + +v v++
  OBART11G16060.8 11 LTTGNQHYVRVPSAITRTYQLEDEQ--NVKLVTAHELEVNIRI--QKSSNKLYMTEGWEEFIEATGLQLGEYVVFKAL--SSSKIHVIVLN 95
                     56678888999********999766..6999999999999999..*******************************54..45556777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.926497IPR003340B3 DNA binding domain
CDDcd100174.45E-8495No hitNo description
SMARTSM010193.8E-4697IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-15798IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-151098IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-111192IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-13147243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-9149246IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.318152249IPR003340B3 DNA binding domain
SMARTSM010191.1152245IPR003340B3 DNA binding domain
PfamPF023621.1E-7153245IPR003340B3 DNA binding domain
CDDcd100171.26E-7162236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004471Molecular Functionmalate dehydrogenase (decarboxylating) (NAD+) activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPPIFSTVR LTTGNQHYVR VPSAITRTYQ LEDEQNVKLV TAHELEVNIR IQKSSNKLYM  60
TEGWEEFIEA TGLQLGEYVV FKALSSSKIH VIVLNKNGHL RCPVPEDISE SEAAPNRPAP  120
SKRTVKEMHQ AITEVKNYIK DIAQFLHRSN KFDITTINAT FMKQDRVYFS KEFSRKYIAP  180
LARRKTLKIK VQLAGHPSST MILHKSTDDR YNLKAGWAHF AIKNNIELGS LCIFHFYKTN  240
QLQATIDVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HMP90.0A0A0D3HMP9_9ORYZ; Uncharacterized protein
STRINGOBART11G16060.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-10B3 family protein