PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G19600.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 105aa    MW: 11581.2 Da    PI: 10.4051
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G19600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.6e-094898449
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHH.HHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterq.VkvWFq 49
                       ++t+ q+e+Le++++++++p  ++r++L  +l    +++ +q +kvWF 
  OBART11G19600.1 48 YVQYTPGQVEALERVYAECPKPRFSRRQQLLCELsilaNIEPKQkIKVWFP 98
                     6789******************************99999987766*****5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-92797IPR009057Homeodomain-like
SuperFamilySSF466894.23E-734100IPR009057Homeodomain-like
PfamPF000468.7E-74898IPR001356Homeobox domain
CDDcd000862.65E-55197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MSGGEGGNFG GGGGRRGGWR QRWRCPMRSG SGSDGGGYDK AGMDSGKYVQ YTPGQVEALE  60
RVYAECPKPR FSRRQQLLCE LSILANIEPK QKIKVWFPKQ KPTNV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418321e-171AK241832.1 Oryza sativa Japonica Group cDNA, clone: J065213C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633127.19e-51homeobox-leucine zipper protein ROC4-like
SwissprotA2XBL96e-30HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
SwissprotQ6TAQ65e-30HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10
TrEMBLA0A0D3HNX22e-70A0A0D3HNX2_9ORYZ; Uncharacterized protein
STRINGOBART11G19600.14e-71(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2029646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.11e-23HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]