PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G22970.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1397aa    MW: 158347 Da    PI: 6.7753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G22970.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.51.8e-2511011161158
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58  
                       +dDg++WrKYGqK+++g  +prsYYrC+++   +Cp+kk+v+ +++dp+vv+++Y geH++
  OBART11G22970.2 1101 VDDGFSWRKYGQKQIQGDMHPRSYYRCAYSrdnHCPAKKQVQPTKDDPTVVDVVYYGEHTC 1161
                       59***************************98999*************************98 PP
2WRKY73.43e-2312331292359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                       Dgy+WrKYGqK++ g+++pr+YY C+++   gC+++k+v r++ dp +++++Y g H+++
  OBART11G22970.2 1233 DGYSWRKYGQKDILGAKYPRGYYMCSHRntqGCKATKQVHRTDGDPLLFDVVYLGVHTCS 1292
                       9**************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147983.30E-122132No hitNo description
SuperFamilySSF525404.79E-56255526IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3006.5E-17276439IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.7E-51279551IPR002182NB-ARC
PRINTSPR003646.4E-15291306No hitNo description
PRINTSPR003646.4E-15363377No hitNo description
PRINTSPR003646.4E-15460474No hitNo description
Gene3DG3DSA:3.80.10.103.3E-19506514IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.04E-25590990IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.3E-19685965IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003646.4E-15815831No hitNo description
Gene3DG3DSA:2.20.25.805.5E-2610931162IPR003657WRKY domain
PROSITE profilePS5081121.20710961159IPR003657WRKY domain
SuperFamilySSF1182905.1E-2410991163IPR003657WRKY domain
SMARTSM007745.4E-3311011163IPR003657WRKY domain
PfamPF031064.9E-2511021161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-2312181292IPR003657WRKY domain
PROSITE profilePS5081120.80512261289IPR003657WRKY domain
SuperFamilySSF1182901.83E-2112271292IPR003657WRKY domain
SMARTSM007744.0E-3412311293IPR003657WRKY domain
PfamPF031061.4E-2212331291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1397 aa     Download sequence    Send to blast
MEGAMFNLPG RLEELLCHHG SMLPKGADEE IPLIKQDLEE IISILHGHSE PKLEDHGMMV  60
RCWMKEVREL SYDIEDSIDQ YEHATRSRNR PNIRHRKFNR WRGNKIPCFP QKLKQRLWMA  120
NKIREFSLRA QEALQRHAMY NNLGGVASTA STTRGDVCSA TPLHPTQMQF REHVDNVRSV  180
SIEADGMEAA LNDLNKLKNL LAGIPTASLV QFREHADKVR GIHTNIETIL NKLENIPPGI  240
TTTTTTRGDV SSTSSRQPTR FMESTCHVGI DAAMDQLENL IDVCGEEKLK VVSIVGVGGV  300
GKTTLANKLY HKLRWQFECW AFVRSSQKTD MRRLLINILS QVWPHQSPDN WKVHTLISSI  360
RTHLQDKRYL IIIDDLWATS TWDIIKCALP DGNNSCRILT TTEIEDLALQ SCSYDLKFIF  420
KMKPFGEDDS RKLFFSSIFG SHSKCPPEVS ETSYDIVRKC GGLPLAIVIV ASLVASHLEK  480
QEQWDYINKS LGYSLMANPT LEGMKQLLNL CYNNLPQHLK ACMLYLSMYQ DHIIWKDDLV  540
SQWIAEGFIC AIEGHDEEEI SRAYFDELLG RKIIQPVHID DNGEVLSCVI HHVVLNFVTY  600
KTIEENFTIV IDHSQTTIRF ADKIRRLSVH FGKVEDSTPP TNMRLSQVRS VAYFGVLKYM  660
PFIMEFRLIK VLVLHFLGDE DSTGIFDLTK ISELVRLRYL KVTSNVTLKL PTRMQGLQYL  720
ETLKIDGKIS AVPSDIIHLP GLLHLTLPAK TNLPNGIVHM TSLRTIGYFD LSCNSAENLW  780
SLGELTNLRD LQLTCSEIHS DNLKNNMKYL GSILGKLHNL KSMTLSPVGS SYADTLHIDR  840
ATSTGISVIG CSSVSSPPAL LQRFDLLPCV CIFSNLPNWI GQLGNLCILK IGIRKITSDS  900
IDVLGVLPEL TVLSLYVHTK LEERIIFKKA GFSILKYFKF KFRCSLVWMK FEAGALPNLR  960
KLKLGFDVHR EDRYDTVPFG IEHLSRLEEI SAKIRIDCTA DNLSRRFAES SFANAIRMHT  1020
GCPSINVRCV DWTSDCKDDD NVGTGEEEHR TLEKHHHIVK EGSNETTAVL QEDTWERAHK  1080
SVNNRKTQPT ERTKVRMSSM VDDGFSWRKY GQKQIQGDMH PRSYYRCAYS RDNHCPAKKQ  1140
VQPTKDDPTV VDVVYYGEHT CGYTAHSRPT GSSNLQEEPQ QPGLEQIPAT SPYYDWIDLR  1200
FIIPPSNKKV EKTKRKRVQV RVSSVEDVSQ EYDGYSWRKY GQKDILGAKY PRGYYMCSHR  1260
NTQGCKATKQ VHRTDGDPLL FDVVYLGVHT CSDHIASLNE QVLLSDLSSA SPQQSQINLQ  1320
LSELDHSSAT VTCTASSSVV VDDQDHQVVT SAAASFLSVD DMLDLDEDGE VWTTTTDEAT  1380
AWDDGESIGE VSDMDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6s2p_N3e-3926859711339NRC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0660530.0AK066053.1 Oryza sativa Japonica Group cDNA clone:J013052I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617274.10.0disease resistance protein RGA5-like
RefseqXP_025877036.10.0disease resistance protein RGA5-like
TrEMBLA0A0D3HQ040.0A0A0D3HQ04_9ORYZ; Uncharacterized protein
STRINGOBART11G22970.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-25WRKY family protein