PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G00840.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 406aa    MW: 45827 Da    PI: 6.5019
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G00840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.92e-18122186259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  OBART12G00840.1 122 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCK 186
                      8*************************9887889********99876522226899********96 PP
2WRKY57.92e-18248312259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  OBART12G00840.1 248 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCK 312
                      8*************************9887889********99876522226899********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-21107186IPR003657WRKY domain
PROSITE profilePS5081114.665116163IPR003657WRKY domain
SuperFamilySSF1182901.96E-19117186IPR003657WRKY domain
SMARTSM007746.8E-29121187IPR003657WRKY domain
PfamPF031061.8E-21122186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-22238312IPR003657WRKY domain
PROSITE profilePS5081114.665242289IPR003657WRKY domain
SuperFamilySSF1182901.96E-19243312IPR003657WRKY domain
SMARTSM007746.8E-29247313IPR003657WRKY domain
PfamPF031061.8E-21248312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MKILESFGHS DCQVVINMIE HQKALMVELR GMVMPILPSD NEQAKLALQL LGDILSCSDK  60
AISMLELGGD TNKLTNLVGG KRKGDKHSMD NHNLEEEAKE SVSKRRKNAE HTGSTVAQAP  120
HNDGHQWRKY GQKWISRAKH SRSYYRCANS KVQGCPATKT VQQMDSSGNG TSKLFNVDYY  180
GQHTCKGDGI ANPYVVDTAH HSMEPINQNE CNSPTLEHEA HEVQDERFEN LCMNAEHTGS  240
TVAQAPHNDG HQWRKYGQKW ISRAKHSRSY YRCANSKVQG CPATKTVQQM DSSGNGTSKL  300
FNVDYYGQHT CKGDGIANPY VVDTAHHSME PINQNECNSP TLEHEAHEVQ DERFENLCMV  360
QNMPEYLIDF ELERAFEFIM NSPLGSEHWT FDDSIRCEHS PICIWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616437.11e-169probable WRKY transcription factor 67
TrEMBLA0A0D3HQP00.0A0A0D3HQP0_9ORYZ; Uncharacterized protein
STRINGOBART12G00840.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-19WRKY DNA-binding protein 46