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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OBART12G01190.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 321aa MW: 34970.9 Da PI: 7.0181 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART12G01190.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 352.6 | 6e-108 | 1 | 314 | 49 | 374 |
GRAS 49 Laarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
++arl++s+ +ly+ l +ps+++ + + +++aa+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp+
OBART12G01190.1 1 MSARLVSSCLGLYAPLpNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPR 94
5799************777777777799999*************************************************************** PP
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
+R+Tg+g+ s e+le+tg+rL++fA++lg+pfef + va++ +l++e+L v ++Ea+aV++ h+l+d ++s ++ +L+l+++l
OBART12G01190.1 95 VRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQRLA 177
********....***************************.7************************99..999999999999....********* PP
GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a g +r+ + + +++Wre+l ++GF+ +l
OBART12G01190.1 178 PKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSL 269
*************.899****************************************************999987.****************** PP
GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+aa+qa lll +++sdgy++ ee+g+l lgWkd L+++SaWr
OBART12G01190.1 270 AGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 314
********************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MSARLVSSCL GLYAPLPNPS PAAARLHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE 60
REERVHIIDL DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMEALEAT GKRLSDFADT 120
LGLPFEFCPV ADKAGNLDPE KLGVTRREAV AVHWLRHSLY DVTGSDSNTL WLIQRLAPKV 180
VTMVEQDLSH SGSFLARFVE AIHYYSALFD SLDASYSEDS PERHVVEQQL LSREIRNVLA 240
VGGPARTGDV KFGSWREKLA QSGFRVSSLA GSAAAQAALL LGMFPSDGYT LIEENGALKL 300
GWKDLCLLTA SAWRPIQASG R
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK243131 | 0.0 | AK243131.1 Oryza sativa Japonica Group cDNA, clone: J100030A12, full insert sequence. |
