PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G01500.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 390aa    MW: 44423.3 Da    PI: 6.8584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G01500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-0681102627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      Cr+++++G+Ck+   Ck++H++
  OBART12G01500.1  81 CRYYMKFGECKHMTFCKYNHPK 102
                      ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.31975103IPR000571Zinc finger, CCCH-type
SuperFamilySSF542361.62E-5197250IPR029071Ubiquitin-related domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAFAESIWTF MPGKKGSVVQ GPNTRTLTNA HDGILDDINC SQIAGKHVGD HSNCANVIKA  60
GVISLLGKLV QYPERPGEPF CRYYMKFGEC KHMTFCKYNH PKDRFSCKTT NTIRSESLCL  120
HDQQTTILEN QFGLPSLVDK ATANTTNLVA SASSSMTPDE IGEGKNNPDE LDCSFVNFTG  180
VCMYMWREAF IPYNFNTTAV KELVVFALQR RNIKYCDIYV TWCGKVLKGD EILSSIPIHT  240
NTHIHVTPRL RGGELIPMEY ERMDELIDHA VRDNNNDLFY YVNLPPKLIN PYKDTWVTFL  300
SDFSRYIIHQ LLQYLNDTFG DPPSWIADIS WVPDMWKTYN HSPNNNSTLW TPRYTLDLNS  360
CSHFARNFLN HFGRGDGCQS STYARLAANT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149681e-137AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005071e-137BX000507.2 Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619118.11e-121putative zinc finger CCCH domain-containing protein 64
SwissprotA3CEM40.0C3H64_ORYSJ; Putative zinc finger CCCH domain-containing protein 64
TrEMBLA0A0D3HQX30.0A0A0D3HQX3_9ORYZ; Uncharacterized protein
STRINGOBART12G01500.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2038288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.25e-10C3H family protein