PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART12G03220.3

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 469aa MW: 50679.7 Da PI: 6.9935

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART12G03220.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.5e-10	160	191	2	33
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 k+ k rr+++NReAAr+sR+RKka+i++Le OBART12G03220.3 160 KQHKIMRRLAQNREAARKSRLRKKAYIQQLES 191 778899************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-4	159	234	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-7	159	192	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.91	161	205	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.01E-6	163	199	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-7	165	206	No hit	No description
PROSITE pattern	PS00036	0	166	181	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.3E-30	243	317	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MGEARRGQNP HHVLGYGFHG TTLPNSMASA NLFEQGGGGG GGAAYFGELE EALVHQVATL 60 RRRAQQTATT TTSHHGHTTP FSTAAAAATA TATARPPATL DIFPSWPMRR SSLPTPKDGC 120 SNVTADTTDS ESSSKNNGDQ GAAAADMASQ FDQIPQQQQK QHKIMRRLAQ NREAARKSRL 180 RKKAYIQQLE SSKLRLAQME QDLERARSQG LLLGGSPGGN TSAGAAMFDA EYGRWLEDGG 240 RRMAELHGGL HAHLPDGDLR AIVDDALAHY DELFRLRAAA AKADVFHLIT GTWATPAERC 300 FLWMGGFRPS DLLKTVAPQL DPLTEQQVVG ICSLQQSSQQ AEEALSQGLE QLHQSLAETV 360 ANGGSVVDEA SLGSFMGYMA LAVGKLSNLE SFVIQADNLR QQTLHQMHRI LTIRQAARCF 420 LAIGEYHNRL RALSSLWASR PREILVADEG NCGELSIAAQ PSESQFSAF

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MGEARRGQNP HHVLGYGFHG TTLPNSMASA NLFEQGGGGG GGAAYFGELE EALVHQVATL  60
RRRAQQTATT TTSHHGHTTP FSTAAAAATA TATARPPATL DIFPSWPMRR SSLPTPKDGC  120
SNVTADTTDS ESSSKNNGDQ GAAAADMASQ FDQIPQQQQK QHKIMRRLAQ NREAARKSRL  180
RKKAYIQQLE SSKLRLAQME QDLERARSQG LLLGGSPGGN TSAGAAMFDA EYGRWLEDGG  240
RRMAELHGGL HAHLPDGDLR AIVDDALAHY DELFRLRAAA AKADVFHLIT GTWATPAERC  300
FLWMGGFRPS DLLKTVAPQL DPLTEQQVVG ICSLQQSSQQ AEEALSQGLE QLHQSLAETV  360
ANGGSVVDEA SLGSFMGYMA LAVGKLSNLE SFVIQADNLR QQTLHQMHRI LTIRQAARCF  420
LAIGEYHNRL RALSSLWASR PREILVADEG NCGELSIAAQ PSESQFSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101620	0.0	AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBank	FJ750929	0.0	FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619722.1	0.0	transcription factor TGAL11
Swissprot	Q2QXL0	0.0	TGL11_ORYSJ; Transcription factor TGAL11
TrEMBL	A0A0D3HRJ6	0.0	A0A0D3HRJ6_9ORYZ; Uncharacterized protein
STRING	OPUNC12G03020.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-126	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]