PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART12G03440.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 233aa MW: 24511.3 Da PI: 6.1127

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART12G03440.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131.4	6.7e-41	19	154	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +pGfrF Pt+eel+ +yL+++++g++ ++++vi+ vd+y ++P++L + ++++++++w+fF++r++++ +g r+ r+t sgyWkatg+ OBART12G03440.1 19 TPGFRFYPTEEELIGFYLRHRLAGTRaDDVARVIPVVDVYGYHPSQLAAmagvATAGDREQWFFFCPRAERELHGGRPARTTPSGYWKATGSPS 112 69********************995666778**********8445544444666****************************** PP NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ ++++g+k+t+vfy+grap+g+kt+W m+ey++ OBART12G03440.1 113 FVFSSssaaATRVIGVKRTMVFYQGRAPSGTKTRWKMNEYKA 154 9866666667**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-43	16	159	IPR003441	NAC domain
PROSITE profile	PS51005	42.57	18	172	IPR003441	NAC domain
Pfam	PF02365	5.6E-23	20	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MVMSGGGGGA RIVSDPAATP GFRFYPTEEE LIGFYLRHRL AGTRADDVAR VIPVVDVYGY 60 HPSQLAAMAG VATAGDREQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSFVFSSSSA 120 AATRVIGVKR TMVFYQGRAP SGTKTRWKMN EYKAVAAAAA DDDHNAAGVA VQLPPMAPPP 180 SSSASGGSSE DAAIDWSSLI TAATDSATAA VDFSFNDDID FSPAAVGPWA PQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-28	20	155	19	143	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-28	20	155	19	143	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-28	20	155	19	143	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-28	20	155	19	143	NO APICAL MERISTEM PROTEIN
3swm_A	3e-28	20	155	22	146	NAC domain-containing protein 19
3swm_B	3e-28	20	155	22	146	NAC domain-containing protein 19
3swm_C	3e-28	20	155	22	146	NAC domain-containing protein 19
3swm_D	3e-28	20	155	22	146	NAC domain-containing protein 19
3swp_A	3e-28	20	155	22	146	NAC domain-containing protein 19
3swp_B	3e-28	20	155	22	146	NAC domain-containing protein 19
3swp_C	3e-28	20	155	22	146	NAC domain-containing protein 19
3swp_D	3e-28	20	155	22	146	NAC domain-containing protein 19
4dul_A	3e-28	20	155	19	143	NAC domain-containing protein 19
4dul_B	3e-28	20	155	19	143	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL928758	0.0	AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AL954632	0.0	AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBank	KP033190	0.0	KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619441.1	1e-105	NAC domain-containing protein 90
Swissprot	Q9FMR3	4e-56	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D3HRM1	1e-167	A0A0D3HRM1_9ORYZ; Uncharacterized protein
STRING	OBART12G03440.1	1e-168	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-51	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]