PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G04120.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 235aa    MW: 24647.1 Da    PI: 8.2061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G04120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-204998255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a++ a+++++g
  OBART12G04120.1 49 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 98
                     8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.94E-3148108No hitNo description
PfamPF008472.1E-134998IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-3349107IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2349107IPR016177DNA-binding domain
PROSITE profilePS5103225.46249106IPR001471AP2/ERF domain
SMARTSM003801.1E-3649112IPR001471AP2/ERF domain
PRINTSPR003672.6E-125061IPR001471AP2/ERF domain
PRINTSPR003672.6E-127288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMNKTVKLRY VPSRGQHSPA SAAAGDEEEL PSPSSADSGG GGGGTARKRY RGVRQRPWGK  60
WAAEIRDPHK AARVWLGTFD TAEDAARAYD GAALRFRGSR AKLNFPEHAT LPPPPPTTTA  120
AAHRCPPPPR TDALLESQEL SPGAGGGDPY SQYARFLQGS GGDGGEAAAR PGGGASQRTP  180
PATTLLYSFE GDAASAACLW QPESGGGGMG WPATSPAAWL EYGFYPPPER RDTDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2448106463ATERF1
3gcc_A2e-2448106463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551ARKRYRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.11e-140ethylene-responsive transcription factor ERF110
TrEMBLA0A0D3HRU81e-165A0A0D3HRU8_9ORYZ; Uncharacterized protein
STRINGOBART12G04120.11e-166(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.18e-25ethylene response factor 110