PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G04190.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 186aa    MW: 20091 Da    PI: 10.5498
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G04190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.6e-195185135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C++Cg+t+Tp+WR+gp g  tLCnaCG++yr  +l
  OBART12G04190.1 51 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 85
                     *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.7164581IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-164595IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-1547107No hitNo description
Gene3DG3DSA:3.30.50.102.8E-154883IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.65E-1750107No hitNo description
PROSITE patternPS0034405176IPR000679Zinc finger, GATA-type
PfamPF003201.5E-165185IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTKVFTKSLL MYFNKIVRSL RPLVHSPPPQ PASPKTKTKA KAKKPKRKRS CVHCGSTETP  60
QWREGPTGRG TLCNACGVRY RQGRLLPEYR PKGSPTFSPS VHAANHRQVL ELRRQQRQST  120
NPSTPPPPPV SAAEPIPDEQ KEEVVSVPVA AAAPATDGSA ASSLDALLLD GPSAPLIVDG  180
DDFLVS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00391DAPTransfer from AT3G45170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683060.0AK068306.1 Oryza sativa Japonica Group cDNA clone:J013136H07, full insert sequence.
GenBankAL9548250.0AL954825.3 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620068.11e-70vegetative cell wall protein gp1
TrEMBLA0A0D3HRV61e-132A0A0D3HRV6_9ORYZ; Uncharacterized protein
STRINGOBART12G04190.11e-133(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-25GATA transcription factor 11