PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G04630.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 473aa    MW: 50120.4 Da    PI: 4.4975
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G04630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.81.3e-16301511112
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknr.atksgy 82 
                      lppG+ F+Pt ee +++yL++ ++gk++++ e+  ++ +d+y   P  L++        +   +w+f ++r++++      +kr++r +++ g+
  OBART12G04630.1  30 LPPGVYFNPTREEAMHHYLNRWIAGKTIPEMEAgfVAGADVYGDGPDALRRrhrpgYWCNYVYKWFFLCHRKRQSLrrttGNKRAERvVAAGGR 123
                      79*************************777664459999**********85345542222445999999999887644323568888667799* PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfykgr 112
                      Wk     k+vl  +g   g +++L fy+ +
  OBART12G04630.1 124 WKVEQG-KKVLG-GGGGGGERDSLGFYSSD 151
                      **6544.67888.78899*********654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-1526154IPR003441NAC domain
PROSITE profilePS5100517.20230198IPR003441NAC domain
PfamPF023654.2E-1031150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDVDPPPPLP PPPPPPPPPA TPQQNTAVEL PPGVYFNPTR EEAMHHYLNR WIAGKTIPEM  60
EAGFVAGADV YGDGPDALRR RHRPGYWCNY VYKWFFLCHR KRQSLRRTTG NKRAERVVAA  120
GGRWKVEQGK KVLGGGGGGG ERDSLGFYSS DQLGHGHFDD VAARFGQVAV AALPASGDLG  180
HGYFDDDAAA LLGQVAMAPA PAPGHHQQGY VVAEAPLPES GYLGHYHHDG HLAQAAAAPE  240
QDHYLGYHSH DAHVADGEAT PEQGYHDDAH VAVAPAPEQG DLGHDQGHLA AALTPEECGE  300
IVGAYEFHPE MVQMLSMGFA VPDEQLVPQL LDPTAGGYDM ASSAIASVGD VKAYAAAAPT  360
PRIRPNAAEA MAATATAETM PPPLDAVAAE LSAPPRGLPP ELAFSALPSV QQEPSCDGDD  420
DSNFGELVAE VMPPLIGENA DVDAGSDEPL PDLAGITPEL DFGHDFFSNQ HRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323760.0AL732376.2 Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HS090.0A0A0D3HS09_9ORYZ; Uncharacterized protein
STRINGOBART12G04630.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.14e-08NAC domain containing protein 105