PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G08560.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 527aa    MW: 57133 Da    PI: 6.5588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G08560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.6e-09108133126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C ++ ++G C++G +CkF+H+
  OBART12G08560.1 108 PGEPDCTYYVKFGSCRFGMKCKFNHP 133
                      5789*********************8 PP
2zf-CCCH25.91.8e-08238260325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +e+C++++  G Ck+G  Ck+ H
  OBART12G08560.1 238 QEECKYYSTPGGCKFGKACKYLH 260
                      699******************** PP
3zf-CCCH34.63.3e-11285309226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Cky  +CkF+H+
  OBART12G08560.1 285 GEKECPYYMRTGSCKYATNCKFHHP 309
                      7899********************9 PP
4zf-CCCH19.91.3e-06432458127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G+Ck+  +Ck++H++
  OBART12G08560.1 432 PGQPECQHFVKSGFCKFRMKCKYHHPR 458
                      5789*********************96 PP
5zf-CCCH23.78.3e-08477502227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ r+G Ck+G+ C ++H++
  OBART12G08560.1 477 DQPVCTYYGRYGVCKFGPACAYNHPF 502
                      6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.258107135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013107134IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6109133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103235263IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4236262IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6238260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4241261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793283311IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5283310IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8285309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6286310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4289308IPR000571Zinc finger, CCCH-type
SMARTSM003560.028431458IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676431459IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081475502IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732475503IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5476503IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5477502IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MADADARVPP KSDPGATPIG LISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL  60
PKPTGWEDGP VVAGDEVSGG EKLPGEVAAA VGVEGAAADS RPRFPRRPGE PDCTYYVKFG  120
SCRFGMKCKF NHPARKKKSR VKGSNGGSGS GGSNSSSNKA SSPDDEQAPK EEYGSYVPDI  180
SPEVDSLGFA DKGSASNLEN FKKYSYEIID VKKGRVEPKE LKVAKEKRKE FISEGSSQEE  240
CKYYSTPGGC KFGKACKYLH RDGKEGKTDA EKVDLNFLGL PLRPGEKECP YYMRTGSCKY  300
ATNCKFHHPD PSNVASKDPQ LEHENGDAPQ QDVQGSSSQP NASIWPDQRT VNEHHVPFIA  360
PSPSYSAGML PPQGMYPPPE WNGYHQVPLN PYYPPGVPFQ HFPAAPINHP MYKAPEIPGH  420
QQVPSEEYPE RPGQPECQHF VKSGFCKFRM KCKYHHPRSP VPPAGALSPL GLPIKPDQPV  480
CTYYGRYGVC KFGPACAYNH PFNFSPVPAA GPPLLPAQYP TPGNYTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114980.0AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620303.10.0zinc finger CCCH domain-containing protein 65 isoform X4
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0D3HTA50.0A0A0D3HTA5_9ORYZ; Uncharacterized protein
STRINGOBART12G08560.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-58C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]