PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G09450.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 213aa    MW: 23570.1 Da    PI: 11.07
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G09450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.33.5e-222269249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ri+nk +rqvtf+kRr g++KKA+EL  L++a vav++fs+  ++y +
  OBART12G09450.1 22 RIDNKERRQVTFTKRRGGLFKKASELALLTGASVAVVVFSPAKHVYAF 69
                     8*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.6091373IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-261387IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-301372IPR002100Transcription factor, MADS-box
CDDcd002651.89E-301489No hitNo description
PROSITE patternPS0035001569IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-181535IPR002100Transcription factor, MADS-box
PfamPF003193.2E-232269IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-183550IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-185071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTVMVHPLGR TSMGRQRIEI RRIDNKERRQ VTFTKRRGGL FKKASELALL TGASVAVVVF  60
SPAKHVYAFG HPSVDAVLRS YASVPGEAAA VAPVPVHGGS GGEDVDLLGL RLAADDTGAQ  120
VAAEHARMRD VAARIVQAKA GRRFWWEADV DALGEAELLE FVTALKKLRD NVGRHANTLL  180
APQPPPLPLQ QKQRRRRHFD LPKFQLWYTH NSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139420.0AL713942.4 Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619582.11e-135agamous-like MADS-box protein AGL61
TrEMBLA0A0D3HTL51e-153A0A0D3HTL5_9ORYZ; Uncharacterized protein
STRINGOBART12G09450.11e-154(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-28AGAMOUS-like 61