PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G11820.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 61aa    MW: 6756.79 Da    PI: 6.5173
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G11820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.65.3e-15955147
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL 47
                     lppGfrF+Ptdeelvv+yL++++ g++l+ +  i++v+++ ++P+dL
  OBART12G11820.1  9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDL 55
                     79*************************998556*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-16556IPR003441NAC domain
PROSITE profilePS5100517.058961IPR003441NAC domain
PfamPF023653.4E-81034IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
METTAAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLLPPGE  60
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317632e-99AL731763.1 Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149682e-99AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618303.17e-35NAC domain-containing protein 83
TrEMBLA0A0D3HUE48e-35A0A0D3HUE4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BSN12e-33A0A0E0BSN1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0JA852e-33A0A0E0JA85_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QXV42e-33A0A0E0QXV4_ORYRU; Uncharacterized protein
TrEMBLQ2QQZ62e-33Q2QQZ6_ORYSJ; No apical meristem protein, expressed
STRINGOGLUM12G13410.23e-34(Oryza glumipatula)
STRINGORUFI10G07040.13e-34(Oryza rufipogon)
STRINGOS12T0477400-013e-34(Oryza sativa)
STRINGONIVA12G11920.13e-34(Oryza nivara)
STRINGOBART12G11820.11e-35(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-15NAC domain containing protein 41