PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G16130.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 211aa    MW: 23896.2 Da    PI: 8.2755
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G16130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-173277148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  OBART12G16130.1 32 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 77
                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-211283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-91239IPR009057Homeodomain-like
PROSITE profilePS500904.4261226IPR017877Myb-like domain
PROSITE profilePS5129425.5522781IPR017930Myb domain
SMARTSM007172.2E-163179IPR001005SANT/Myb domain
PfamPF002493.5E-153276IPR001005SANT/Myb domain
CDDcd001677.54E-133477No hitNo description
Gene3DG3DSA:1.10.10.607.9E-204078IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDRAGGPATG LNRTGKSCRL RWVNYLHPGL KRGRMSPHEE RLILELHARW GNRWSRIARR  60
LPGRTDNEIK NYWRTHMRKK AQERKSNMSP SSSSSSLTYQ SCHPETPSMI IGIEEQELHG  120
GSGCITSIMK STPVDMDGYP MDQIWMEIEA PNVLPGPCFD EAKDSASNSL SGPLLPYPMW  180
DYYCPETCLR MDDEIKVAPQ FGYGKGVGPC Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-18138137105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332820.0CT833282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620228.11e-157myb-related protein MYBAS2 isoform X1
SwissprotQ4JL761e-152MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A0D3HVU11e-156A0A0D3HVU1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BU751e-156A0A0E0BU75_9ORYZ; Uncharacterized protein
STRINGOGLUM12G17720.11e-157(Oryza glumipatula)
STRINGOBART12G16130.11e-157(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.38e-51myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]