PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G16820.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 399aa    MW: 44137.3 Da    PI: 6.8955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G16820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.36.9e-07112133223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ C+k+Fs++ +L+ H+++H
  OBART12G16820.1 112 QCQMCSKVFSTSGSLREHMMMH 133
                      7*******************99 PP
2zf-C2H216.32.8e-05316338123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ CgksF +   L  H+r+H
  OBART12G16820.1 316 HRCNTCGKSFGSGQALGGHMRRH 338
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.575173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0585180IPR007087Zinc finger, C2H2
PfamPF139128.9E-105175IPR007087Zinc finger, C2H2
PROSITE patternPS0002805273IPR007087Zinc finger, C2H2
SMARTSM003553.3E-4111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.57111138IPR007087Zinc finger, C2H2
PfamPF138945.0E-4112133No hitNo description
SuperFamilySSF576672.34E-10112133No hitNo description
Gene3DG3DSA:3.30.160.604.1E-7112137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-10311338No hitNo description
SMARTSM003550.0079316338IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-4316338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-11316339IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907316343IPR007087Zinc finger, C2H2
PROSITE patternPS000280318338IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAEQFCTIES SSFPEQPGVP HLFCFLFSTR IVETRSKKHP DMAPRGKPWK HCCNKCDKSF  60
RSGNALGGHM SCHRSVGNQP KSTSSPPTVV DLHMPLLSSC DDNLLLLPPE TQCQMCSKVF  120
STSGSLREHM MMHGGEKVVV KAEEEAAGLI EALGIADSVQ DVMVFSSVKR KRSFRSKRQT  180
PALSLEEIEA ADALLLLSGC FDKTSAYEDC YLGDIEDSSL RSIVLTEVNM NAVDRCSVRS  240
VGSKEPINDN NSGYKDCYGQ SDKENCLIVP KEEMDPNDFD HELVRDAALR KPRTDNSDEE  300
MKFGDLPAAA MKDNSHRCNT CGKSFGSGQA LGGHMRRHYV RKCNRQRGVA DRTGSVLMKV  360
QKLKLRLDPI LFDVTLPALT DGDCCISVGV KPEPQLCQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021410.0AK102141.1 Oryza sativa Japonica Group cDNA clone:J033085L23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619008.10.0uncharacterized protein LOC4352630 isoform X1
TrEMBLA0A0D3HW270.0A0A0D3HW27_9ORYZ; Uncharacterized protein
STRINGOBART12G16820.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.19e-08C2H2 family protein