PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G17890.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 172aa    MW: 18696.3 Da    PI: 10.3639
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G17890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.9e-32106163359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  OBART12G17890.1 106 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 163
                      9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.6E-865102IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-3492163IPR003657WRKY domain
PROSITE profilePS5081130.14899162IPR003657WRKY domain
SuperFamilySSF1182901.31E-27102163IPR003657WRKY domain
SMARTSM007744.4E-38104164IPR003657WRKY domain
PfamPF031061.3E-27106162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MFKRSNSGIS LKFDSPSATG TMSSAFMSSL SMDGSVASLE GKPPFHLISG PVASDPVNAH  60
HAPKRRCTGR GEDGSGKCAT TGRKLRIKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG  120
SPHPRGYYKC SSVRGCPARK HVERCVDDPA MLIVTYEGEH NHTRLPTQSA QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2192166275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706481e-148AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.
GenBankAK1048901e-148AK104890.1 Oryza sativa Japonica Group cDNA clone:001-045-D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620342.11e-121protein WRKY1
SwissprotO043366e-72WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0D3HWE81e-124A0A0D3HWE8_9ORYZ; Uncharacterized protein
STRINGOBART12G17890.11e-125(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-74WRKY DNA-binding protein 21