PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G17940.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 260aa    MW: 26890.6 Da    PI: 3.78
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G17940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000571872043855
                      STCHHHHHHHHHHHHHHH CS
              HLH  38 lsKaeiLekAveYIksLq 55 
                      ++ a++L k+++Y+ksLq
  OBART12G17940.1 187 NNQASTLDKTIRYMKSLQ 204
                      689**************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEMTSCYNDV DAGDMLAAVD YYSAGAGTGA GGDLFDMVWP GRRRREEDNT SGCLPLSPPP  60
PPELAVDDQL PAGGDGGGGE PVGYFLTERV YTVYESGAGA GAGGDLFDMV WPGRRRREED  120
NTSGCLPLSP PLPPELAVDD QLPAGGDGGG GGGEPVVVAV AEDDDSGERW TEDQVPTDEG  180
ICVMESNNQA STLDKTIRYM KSLQQHAQAM SVGCSMMAAA AAGVTYPFLP PPPSPYSAIN  240
DDACGAGAID DVSGSSCRVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317431e-113AL731743.2 Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-113AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-113CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HWF30.0A0A0D3HWF3_9ORYZ; Uncharacterized protein
STRINGOBART12G17940.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012