PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G18260.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 408aa    MW: 45917.1 Da    PI: 7.0464
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G18260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.4e-15177212439
              TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  OBART12G18260.1 177 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 212
                      79*********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544951.38E-2611107IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.101.0E-2411102IPR016135Ubiquitin-conjugating enzyme/RWD-like
PROSITE profilePS5012715.04716115IPR000608Ubiquitin-conjugating enzyme E2
SMARTSM002123.7E-416192No hitNo description
PfamPF001795.1E-104399IPR000608Ubiquitin-conjugating enzyme E2
SMARTSM011147.8E-13174215IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163414.281176214IPR005172CRC domain
PfamPF036384.7E-11177211IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MASSGDPSAV VVPRNFRLLE ELERGEKGIG DGSVSYGMDD ADDIYMRSWT GTIIGPHNTV  60
HEGRIYQLKL FCDKDYPDRP PTVKFHSRIN MTCVNPENGL FASTALPQET KLTNWGGRRM  120
KGKGASRAAA RNPSALSFIV CVLHLDHIVL NHVDVIHVTT NLFMEQLIRS PMDFGRRKCT  180
CKKSGCLKKY CDCYQGGAGC SINCKCDDCK NPYGRKVGVI LDGKNILAGP TPNERNGTEA  240
DSSDDEEDDY YMNRPLSPVS PSPVSRESSF QQETLVGVEV QTMNGHLYPK PLTQVRPESW  300
QLTRRPTEEV RGEAWHYLRR PSEDGTSDVM EGHADPKFQR DNKQLENHVD RYSIPRCIEV  360
MNAMADLSPI EKSLAPDVFL DPSNREIFLS LTVDIRTMWL KRKMKSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6d6i_A5e-3281143109Ubiquitin-conjugating enzyme E2 variant 1
6d6i_D5e-3281143109Ubiquitin-conjugating enzyme E2 variant 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4067180.0CU406718.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618281.10.0protein lin-54
TrEMBLA0A0D3HWJ40.0A0A0D3HWJ4_9ORYZ; Uncharacterized protein
STRINGOBART12G18260.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.19e-18TESMIN/TSO1-like CXC 2