PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G19190.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 194aa    MW: 21172.9 Da    PI: 8.3984
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G19190.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY139.73.3e-4361645170
            YABBY   5 ssseqvCyvqCnfCntila.....vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                        +eqvCyv+CnfCntila     vsvP +s++++vtvrCGhCt+llsvnl+  ++  +a ++     +++ l+e + ++   +     ++s  
  OBART12G19190.3   6 APAEQVCYVHCNFCNTILAfsidtVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDH----HHHHLQESGLSGCFRD-----QSSYP 90 
                      5689**************76666689******************************99998752....2222333333222211.....11111 PP

            YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      +   s   s+++ +  p +  ++   ++ q+   a       +i+rika+nPdishreafs+aaknWah+P+ihfgl
  OBART12G19190.3  91 EFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALH---ARQIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 164
                      1111112133333334444444555566777776654...579********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-467164IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSAQIAPAEQ VCYVHCNFCN TILAFSIDTV SVPGNSMLNI VTVRCGHCTN LLSVNLRGLM  60
HSAPALQDHH HHHLQESGLS GCFRDQSSYP EFGFSAASSS SKLRLPPAAA AMVSYSQQNQ  120
QLEQALHARQ IRRIKANNPD ISHREAFSTA AKNWAHYPNI HFGLSPGHEG GKKLVDVDPI  180
PTAPSSKKIQ GFYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740181e-176AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds.
GenBankAK0707371e-176AK070737.1 Oryza sativa Japonica Group cDNA clone:J023061C09, full insert sequence.
GenBankAK1049181e-176AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence.
GenBankCT8291391e-176CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence.
GenBankFJ9401951e-176FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618575.11e-122protein YABBY 6
SwissprotQ2QM171e-123YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0D3HWW11e-143A0A0D3HWW1_9ORYZ; Uncharacterized protein
STRINGOBART12G19190.11e-128(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-40YABBY family protein