PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G19790.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 242aa    MW: 26629 Da    PI: 9.2729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G19790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.2e-181765148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+e+de+l  +++q+G+g +W + +r++g++R++k+c++rw++yl
  OBART12G19790.1 17 RGAWTAEDDERLRSYIQQHGTGgNWMALPRKVGLRRCGKSCRLRWLNYL 65
                     89*********************************************97 PP
2Myb_DNA-binding383.7e-1272114246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+++  +d l++ +++  G++ W++Ia++++ gRt++++ ++w++
  OBART12G19790.1  72 GAFSDPDDRLILALHAAVGTR-WSLIAAHLP-GRTDNHLNNYWNN 114
                      6788899**************.*********.************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5711265IPR017930Myb domain
SuperFamilySSF466897.1E-2516112IPR009057Homeodomain-like
SMARTSM007172.8E-121667IPR001005SANT/Myb domain
PfamPF002491.6E-151765IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-201872IPR009057Homeodomain-like
CDDcd001671.06E-91965No hitNo description
PROSITE profilePS5129419.12166120IPR017930Myb domain
SMARTSM007174.4E-970118IPR001005SANT/Myb domain
PfamPF002494.2E-1072114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1873118IPR009057Homeodomain-like
CDDcd001674.50E-573106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRSSACCDK AAVKPKRGAW TAEDDERLRS YIQQHGTGGN WMALPRKVGL RRCGKSCRLR  60
WLNYLRPGIR HGAFSDPDDR LILALHAAVG TRWSLIAAHL PGRTDNHLNN YWNNKKKKTP  120
PLLLAAHQLH VASTSSGGMH VGVGEGHGYD DVFAAAHSLS STAATSFSSG GATELDEIFR  180
STGTSGGDCS SSAQTRSTDD ALMMMMMMMM NWHNHQNQLQ LQGELQGVQQ QQQQFGFGMP  240
YW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-21171187106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7318877e-99AL731887.5 Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8318097e-99AL831809.3 Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149687e-99AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126207e-99CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877978.15e-73LOW QUALITY PROTEIN: transcription factor RAX1-like
TrEMBLA0A0D3HX300.0A0A0D3HX30_9ORYZ; Uncharacterized protein
STRINGOBART12G19790.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3871133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-52myb domain protein 36