PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART12G19870.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 168aa MW: 17945.3 Da PI: 11.6745

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART12G19870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.6e-11	60	109	1	50
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e++++r rr+++NRe+ArrsR+RK+ ++eL+ k+ +L a ++L+ +l OBART12G19870.1 60 EERRRRLRRRISNRESARRSRARKQRHLDELRAKASALRATSRDLAARLR 109 68899*************************************99998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.4E-7	56	109	No hit	No description
SMART	SM00338	1.5E-7	58	124	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.8E-7	60	108	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.576	62	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.29E-8	64	109	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MAGLPFPSDS DTALEAFLAD IGFGAPCPEA APAPSPSHPD TTAAAATDEP VMAGDDQADE 60 ERRRRLRRRI SNRESARRSR ARKQRHLDEL RAKASALRAT SRDLAARLRG ARARAALVAL 120 TNAHLRDEAG KLARRLAAAR RVIALRQLYS AAAAGGGFEM QALASLIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	RRSRARKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619047.1	1e-108	ocs element-binding factor 1
TrEMBL	A0A0D3HX42	1e-109	A0A0D3HX42_9ORYZ; Uncharacterized protein
TrEMBL	I1R861	1e-109	I1R861_ORYGL; Uncharacterized protein
STRING	ORGLA12G0171700.1	1e-110	(Oryza glaberrima)
STRING	OBART12G19870.1	1e-110	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15125	19	19