PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G00400.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 389aa    MW: 41864.2 Da    PI: 8.6522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G00400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47e-052763141255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  OGLUM01G00400.1 276 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 314
                      7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.528264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-5274318No hitNo description
SuperFamilySSF474594.97E-11274326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-9278321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MMASSSSSSS LCDTNHLLQD DLPWPSMPFA LAPNTFGLNH QWSQPPMLSS STDQLSSYEL  60
ESLQSVQSQL AAAPPTLSPH LQAHQLSTVL MMQELGFQWS SCAAPADQHS IASSMNNNNN  120
NSNVMVNEEE LRPRPDQSLI SNPRSCSATT LLPPPHLHLD GAVLPSINVS RLQKPAAGDE  180
PPQICCKRQA AAAVVGHSSI RDEHVPCPYA GPPAHLIQGP SNTLQMKRNT NAAAQGRGGR  240
HGSSTEHRSS TALPPSSKKP RLESHSSSML PSFKVRKEKL GDRIAALQQL VSPFGKTDTA  300
SVLMEAIGYI KFLQDQVETL SGPYLRSSKN SKKLACRAAQ QQRKGTSNGG DAAAKLDLRS  360
RGLCLVPLSC TSYVTNENGV WPPPNFRGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194930.0AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627200.10.0uncharacterized protein LOC4326301
TrEMBLA0A0D9Y2520.0A0A0D9Y252_9ORYZ; Uncharacterized protein
STRINGOGLUM01G00400.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.16e-46bHLH family protein