PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G00620.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 536aa    MW: 58511 Da    PI: 10.0042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G00620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-082878654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                     +e+ErrRR++++    +L +l+P+  + k ++   +    L +A  YIk+L
  OGLUM01G00620.1 28 KEMERRRRQDMKGLCVKLASLIPNeHCsKSKGATRTQLGSLDEAAAYIKKL 78
                     79**********************7666777777***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.362278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-112691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-92895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-72884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-52878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF126207.0E-15425468IPR022256Domain of unknown function DUF3778
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDQEKADGGG RRRRSSGSGA SSTAAERKEM ERRRRQDMKG LCVKLASLIP NEHCSKSKGA  60
TRTQLGSLDE AAAYIKKLKE RVDELHHKRS MMSITSSRCR SGGGVPAAAA GQSTSGGGGE  120
EEEDMTRTTA AAAVVEVRQH VQEGSLISLD VVLICSAARP VKFHDVITVL EEEGADIISA  180
NFSLAAHNFY YTIYSRAFSS RIGIEASRIS ERLRALYTAL ATWSKDTYIA PTSKFGVGTL  240
PKISPHRPLF PFDSGGLPPA RVGGELVFCR RAPWVPVWSD AAAGGGGGDA RSEDWWMNRR  300
KRLVPCGGGG YIIVGDREKP APCGGASCFV VGVRDVTVLM NRQKKLAPCG SVSGFVIGVR  360
EVAAPDGGRS YLRPASPGQA VARSLLLVVL DCPLARWQRF CRISLPHSRM SIQEDNGLFA  420
TIRVLQWVWA PSSSVFPTSS FHAEFVVRVE LTLLRFNDEL RGLLLLSPSS WRQPDGDYRF  480
VKRAARQRRP KVAFVAALPQ LPVDFFRSFE TDGFMLPFDL FGNVLGFIPV NSVALY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Y2790.0A0A0D9Y279_9ORYZ; Uncharacterized protein
STRINGOGLUM01G00620.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-13bHLH family protein