PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G00630.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 221aa    MW: 23802.8 Da    PI: 9.8379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G00630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-0937105455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.as................kapskKlsKaeiLekAveYIksLq 55 
                        + +E++RR +++    +L +l+P  a+                + +++ ++  + Le+A  YIk+L+
  OGLUM01G00630.1  37 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 105
                      56899*********************555**************76666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.52833104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-935117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-1135118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-637104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003239110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKSRKNSTTS TKAAGSCHTS SSGGGGNCYS SSSSKMERKD VEKNRRLHMK GLCLKLSSLI  60
PAAAPRRHHH HYSTSSSSSP PSSTKEAVTQ LDHLEQAAAY IKQLKGRIDE LKKRKQQAAA  120
LTTSTSNGGG GGGMPVVEVR CQDGTLDVVV VSEAIGEERE RAVRLHEVIG VLEEEGAEVV  180
NASFSVVGDK IFYTLHSQAL CSRIGLDASR VSHRLRNLLQ Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094320.0AK109432.2 Oryza sativa Japonica Group cDNA clone:006-308-A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622948.11e-121transcription factor bHLH168
TrEMBLA0A0D9Y2801e-160A0A0D9Y280_9ORYZ; Uncharacterized protein
STRINGOGLUM01G00630.11e-161(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-18bHLH family protein