PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G01950.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 444aa    MW: 47720.7 Da    PI: 7.5763
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G01950.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-17391434146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++
  OGLUM01G01950.2 391 RRSFSKEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNS 434
                      6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF118057.2E-13948364IPR021763Protein of unknown function DUF3326
SuperFamilySSF466898.58E-14385437IPR009057Homeodomain-like
PROSITE profilePS5129422.315386440IPR017930Myb domain
SMARTSM007172.1E-15390438IPR001005SANT/Myb domain
PfamPF002494.1E-15391434IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-20393436IPR009057Homeodomain-like
CDDcd001671.34E-5411436No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MALHLTRPFL RPSPPSPPPP RPTRRSSRAH CLAPSASARG PSFRRPYTSV LVVPTGVGAA  60
VGGFAGDALP VARALGAVAD CVISHPNVLN AAMLYWPMPN TLYVEGYALD RFAEGSWALQ  120
PVHQNKVGLV LDSGIEEELR LRHLQVADAA RASLGLPVVE YIVTDTPLEI KTWFDPKCGK  180
STGSVGNSDS LLRAVEALVN RSDVNAVAVV ARFPDDDPED SDCYREGKGV DLLAGVEAII  240
SHLIVKKFKI PAAHAPAVLP PVLSLSVSPR SAAEEIGHTF LPCVLAGLSN APQYVMRRNG  300
NMDNGCIVAS DVDSVILPKD ACGGDGTIAF ARTATKNKPL IITVQENETV LDDTPDKFNI  360
EAVSSQPPPR LISEHLPAGD PPSPLSRSRK RRSFSKEEDE LLLKLHALLG NRWSLIAGRL  420
PGRTDKEVMN HWNSKLMDTS TLAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387392SRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878284.10.0uncharacterized protein LOC4325987
SwissprotP084521e-106Y1174_SYNP6; Uncharacterized lipoprotein syc1174_c
TrEMBLA0A0D9Y2Q60.0A0A0D9Y2Q6_9ORYZ; Uncharacterized protein
STRINGONIVA01G01950.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-10MYB family protein