PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G02990.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 316aa    MW: 34978.9 Da    PI: 6.5186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G02990.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-095095347
                     SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                     +W++eE +++ +a + l  +  +W+++ar ++ gR++ ++ ++++++
  OGLUM01G02990.2 50 KWSPEENKQFERALAGLDLRcpDWDRVARAIP-GRSALEVMNHFRDL 95
                     8*****************99************.***********976 PP
2Myb_DNA-binding482.9e-15163207347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  OGLUM01G02990.2 163 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 207
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.5E-54798IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-44994IPR009057Homeodomain-like
PfamPF002494.2E-85095IPR001005SANT/Myb domain
CDDcd001671.33E-75095No hitNo description
SuperFamilySSF466893.36E-850103IPR009057Homeodomain-like
PROSITE profilePS500906.2845096IPR017877Myb-like domain
PROSITE profilePS5129418.359156212IPR017930Myb domain
SuperFamilySSF466897.48E-18157212IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-17159210IPR006447Myb domain, plants
SMARTSM007173.4E-13160210IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-12160206IPR009057Homeodomain-like
PfamPF002491.1E-12163207IPR001005SANT/Myb domain
CDDcd001679.88E-12163208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MRFAELSCGK KEEEEEEEEE EKEIGDDDEG CVLPPMDHYA SRGNWFMARK WSPEENKQFE  60
RALAGLDLRC PDWDRVARAI PGRSALEVMN HFRDLELDVQ QIENGMVPFP VYGAAAAGGA  120
FTLQWDGAHG VGDFRNAYRF GGGGGGKRHF GRTPEQERKK GVPWTEEEHK LFLLGLKKYG  180
KGDWRNISRN FVQTRTPTQV ASHAQKYFIR LNSGGKDKRR SSIHDITTVN LTDDRPPSPS  240
QSSLISNQSN TSTLTAAVAP FSSTADVKPQ NAANASFNSP SRTLGMAGYG MGLQDQGLQC  300
GGPLHDQLAA SRSILF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1240112373RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679640.0AK067964.1 Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence.
GenBankEU8372500.0EU837250.1 Oryza sativa Japonica Group clone KCB707G04 myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621817.10.0transcription factor DIVARICATA
SwissprotQ8S9H74e-81DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D9Y3380.0A0A0D9Y338_9ORYZ; Uncharacterized protein
STRINGOGLUM01G02990.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-63MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]