PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G03980.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 295aa    MW: 32957.1 Da    PI: 6.6783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G03980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-183276147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW++eE+e+++da  ++G + Wk+I +++g ++t  q++s+ qky
  OGLUM01G03980.1 32 RERWSEEEHERFLDALIMYGRD-WKKIEEHVG-TKTTIQIRSHAQKY 76
                     78******************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-182682IPR009057Homeodomain-like
PROSITE profilePS5129420.7692781IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-92983IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-183079IPR006447Myb domain, plants
SMARTSM007171.3E-123179IPR001005SANT/Myb domain
PfamPF002492.1E-143276IPR001005SANT/Myb domain
CDDcd001672.20E-103477No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDRNTNNSSN SSSSSEMPGK KARKPYTITK PRERWSEEEH ERFLDALIMY GRDWKKIEEH  60
VGTKTTIQIR SHAQKYFLKV QKMGLAAGLP PQYPRRRLVM RQQQQSSPAV SSSVAATAIL  120
HGQPQCLPPH HNVAVQSSIG WDCPGNLEWA STSGTAAWGN HHGLIEPSAA FDSFPGESSF  180
MGAASFSNMS MDWSGTTSEM ATASIVQDET IELPLSPDDM QFAQVYRFIG DIFDPDSPCP  240
VETHLQKLKN MDDITVKTIL LVLRNLEDNL LSPQFEPIRR LLSTYDPNRG LSGHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRRLVMRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069690.0AK106969.1 Oryza sativa Japonica Group cDNA clone:002-119-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646001.10.0protein REVEILLE 8
TrEMBLA0A0D9Y3G70.0A0A0D9Y3G7_9ORYZ; Uncharacterized protein
STRINGOGLUM01G03980.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-48MYB_related family protein