PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G04870.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 93aa    MW: 10053.2 Da    PI: 7.4397
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G04870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-082759133
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgk 33
                     +g W++eEde+l+  ++  G  tW+++a+  gk
  OGLUM01G04870.1 27 KGLWSPEEDERLYTHITHRGVSTWSSVAQLAGK 59
                     678**************************9994 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3652255IPR017877Myb-like domain
SuperFamilySSF466892.94E-62558IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-102659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MVRKPTSSRH GEAAGGGGGA AEEKERKGLW SPEEDERLYT HITHRGVSTW SSVAQLAGKN  60
SFCLACNLID FYATNSYTCD LVSRSDKVGI AFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-76CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645714.15e-20myb-related protein Hv33
TrEMBLA0A0D9Y3T94e-63A0A0D9Y3T9_9ORYZ; Uncharacterized protein
STRINGOGLUM01G04870.16e-64(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2112166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-09myb domain protein 61