PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G06460.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 331aa    MW: 35273.3 Da    PI: 10.2788
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G06460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-15205249347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  OGLUM01G06460.1 205 PWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 249
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6885100IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.454198254IPR017930Myb domain
SuperFamilySSF466891.12E-18199255IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-18201253IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-11202248IPR009057Homeodomain-like
SMARTSM007177.0E-12202252IPR001005SANT/Myb domain
CDDcd001672.69E-10205250No hitNo description
PfamPF002491.3E-12205249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKKTNSLFQS VDLARIKRQV QWQKCTSKAT RCCYCYISTC TILSQLLRIP SPLLLVLLAS  60
LQLLLLVVLA VLVVLGLPSA ASMARKCSSC GNNGHNSRTC TGQRSLQESG GGYGGGGAGG  120
VRLFGVQLHV GGAPLKKCFS MECLSSPSPS PAYYAAVAAA ASNSSPTVSS SSSLVSVEEA  180
GEKMANGYLS DGLMARAQER KKGVPWTEEE HRKFLVGLEK LGKGDWRGIS RHFVTTRTPT  240
QVASHAQKYF LRQSSLTQKK RRSSLFDVIE DAEKAPSHGT ARSHAAASSI LNPDAKLFIT  300
SSEQQQQRTT KNNPSFSDGG KASGATATPA T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621090.0AK062109.1 Oryza sativa Japonica Group cDNA clone:001-045-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625837.11e-100transcription factor MYBS3-like
TrEMBLA0A0D9Y4G00.0A0A0D9Y4G0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G06460.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-49MYB_related family protein