PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G06690.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 334aa    MW: 35835 Da    PI: 6.6087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G06690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13230276455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  OGLUM01G06690.1 230 QHTMSERKRREKLNDSFVALKAVLPPG-----SKKDKTSILNRAREYVKSLE 276
                      599**********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.39E-15224280No hitNo description
SuperFamilySSF474594.45E-17226293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.154226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-14229273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10230276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-14232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1708.3E-5274295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDSGGWIVHG YTNGATATGA GNHGFTCGYA ASSVGLINYD VQISMHLSMD DDDDQSAVYG  60
AAMVDDLLMP SPSTHHAVAA AAGSFPSSSS SSASFRSASV SYSPDTSSSA AAAAAATGFY  120
PELSSQVAPL LPPPPLVRNE PQHGRYTAGL PPPPPVTGGA FRRYARHLGP RRAPKPGACG  180
QRMFKTAMSA LAKMHMETTY MRRQYYYQQA AAAAAAEAAP PPLSGNNQLQ HTMSERKRRE  240
KLNDSFVALK AVLPPGSKKD KTSILNRARE YVKSLESKLS ELEEKNRELE ARLSTRPDDT  300
KNDEEEAAAP LEADGEVKRE DPVEIEALDN FFIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239ERKRRE
2235240RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034170.0AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880866.11e-138putative transcription factor bHLH041
TrEMBLA0A0D9Y4I60.0A0A0D9Y4I6_9ORYZ; Uncharacterized protein
STRINGOGLUM01G06690.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-16bHLH family protein