PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G06710.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 327aa    MW: 34672.9 Da    PI: 8.6931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G06710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.5e-14180226455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +Ka+iL +A e+IksL+
  OGLUM01G06710.1 180 QHTMSERKRREKLNDSFLALKAVLPTG-----SKKDKASILIRAREHIKSLE 226
                      599***********************6.....499***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.99E-15174230No hitNo description
SuperFamilySSF474594.97E-16176236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.339176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-15180235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-11180226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-14182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDSSSWIHGY TNANATGANS GFMCGYAACS PVEFPQQQQL ISMQMGMDDE SAVYDGASMV  60
DDLLMPSSSA HHHAAAGSFQ YSSLTSSSAS FRSASVSCSP ESSAAATELP AATGGAFSRY  120
ARHLRPRRPP KPGACGQRMF KTAMSVLANM HVAATYRRQY YYQQAAAAAA PALPSDNQLQ  180
HTMSERKRRE KLNDSFLALK AVLPTGSKKD KASILIRARE HIKSLESKLS ELEARLVSRP  240
AAKNDKGETA APEASDETKR EDLVEIEVTT SGSGGGGGGM RTTDVVLRTL QCLREQIGDG  300
ASLVAMSTSA GSGGRPPSAN LTLQLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189ERKRRE
2185190RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879409.11e-164uncharacterized protein LOC107280684 isoform X2
TrEMBLA0A0D9Y4I80.0A0A0D9Y4I8_9ORYZ; Uncharacterized protein
STRINGOGLUM01G06710.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-19bHLH family protein