PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G06730.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 477aa    MW: 50022.1 Da    PI: 7.1526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G06730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.8e-12289334555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  OGLUM01G06730.1 289 HMISERKRREKLNDSFLALKAVLPPG-----SKKDKTSILIRAREYVKSLE 334
                      8899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16286352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.60E-13286338No hitNo description
Gene3DG3DSA:4.10.280.102.5E-12287332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9289334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146864.16E-4325353No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-4333352No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEDCSSWIHG YANANATAGN NGFMCGYAAS CSPVEFQQQQ QLVGSQIEHH LNQASLICNL  60
FDQETMHKIK EILGFNLVGV AFYYGMQISM QMGMDDESAV YDGASMVDDL LMASSSAHHH  120
AGAGSFQYSS PTSSSASFRS ASVSCSPESS AAATTHFLGP PAPSAAAAGF HYPEVSSQAP  180
LPLPLPPYEP QHGQYTTVLS PPPPAPELPA TTTPATGGAF RRYARHLRPR RLPKPGGCGQ  240
RMFKTAMSVL TKMHVAATYN RQYYYQQAAA AAASASAAEA PPSGNQLQHM ISERKRREKL  300
NDSFLALKAV LPPGSKKDKT SILIRAREYV KSLESKLSEL EEKNRELEAR LASRPAAAAK  360
NDKGETAAAP APEAGDETKR KDLVEIEVTT SGGGAGAADA AAAAGGDQET CTLNVDLRGG  420
GGGGGGGGGM STTDVVLRTL QCLREQIGDG ASLVAMSTSA GSGGRPPRAN LTLQLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297ERKRRE
2293298RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029640.0AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626911.10.0uncharacterized protein LOC4327325
TrEMBLA0A0D9Y4J00.0A0A0D9Y4J0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G06730.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-16bHLH family protein