PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G06940.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 97aa    MW: 10787.5 Da    PI: 10.6606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G06940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM255.3e-08834127
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkk 27
                     lppG+rF+P d+elv++yL ++ ++++
  OGLUM01G06940.1  8 LPPGVRFDPADDELVSRYLLRRRRSRR 34
                     79*****************99988777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-8438IPR003441NAC domain
PfamPF023653.6E-5933IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MAAAADGLPP GVRFDPADDE LVSRYLLRRR RSRRRIGDRV AQVVLQFAKD DDIGFGGSHS  60
AQVLLSRDRK LTPITALLRK TMSMPVFLVA CYLQDAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066452e-41AK106645.1 Oryza sativa Japonica Group cDNA clone:002-113-E10, full insert sequence.
GenBankAP0056412e-41AP005641.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13.
GenBankAP0149632e-41AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-41CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Y4M06e-62A0A0D9Y4M0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G06940.11e-62(Oryza glumipatula)