PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G09830.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 785aa    MW: 84938.6 Da    PI: 10.0753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G09830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12631677455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  OGLUM01G09830.1 631 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 677
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.2E-50228413IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831627676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-18630693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-15630681No hitNo description
Gene3DG3DSA:4.10.280.108.9E-18631690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10631677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16633682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MNKPPARKAE KSPWVGDRAG SPAPSEPRTG SARLGSGSNP TGVEKAKAPS FSFHTSPPLF  60
FSLSTSQVAS LLRPRNPLTN QRNLRHHHHH HHRLLRARRI RGTLALAWGV GGGRSGRRRR  120
RGGGCSDSAS GGWGGPPLSS WGGAEETPPV LDSVAAAPIR AREPQHGIMV MKMEADEDGA  180
NGGTGGTWTD EDRALTASVL GTDAFAYLTK GGGAISEGLV AASLPVDLQN RLQELVESDR  240
PGAGWNYAIF WQLSRTKSGD LVLGWGDGSC REPRDGEMGP AASAGSDEAK QRMRKRVLQR  300
LHSAFGGVDE EDYAPGIDQV TDTEMFFLAS MYFAFPRRAG GPGQVFAAGV PLWIPNTERN  360
VFPANYCYRG YLANAAGFRT IVLVPFETGV LELGSMQQVA ESSDTLQTIR SVFAGAIGNK  420
AGVQRHEGSG PTDKSPGLAK IFGKDLNLGR PSAGPGTGMS KADERSWEQR TGGGSSLLPN  480
VQRGLQNFTW SQARGLNSHQ QKFGNGILIV SNEATPRNNG VVDSSTATQF QLQKAPPLQK  540
LPQLQKSHQL VKPQQLVSQQ QLQPQAPRQI DFSAGTSSKP GVLTKKPAGI DGDGAEVDGL  600
CKDEGPPPAL EDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  660
DKASLLGDAI TYITDLQKKL KEMEVERERL IESGMIDPRD RTPRPEVDIQ VVQDEVLVRV  720
MSPMESHPVR AIFQAFEEAE VHAGESKITS NNGTAVHSFI IKCPGAEQQT REKVIAAMSR  780
VMNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26625687264Transcription factor MYC2
5gnj_B2e-26625687264Transcription factor MYC2
5gnj_E2e-26625687264Transcription factor MYC2
5gnj_F2e-26625687264Transcription factor MYC2
5gnj_G2e-26625687264Transcription factor MYC2
5gnj_I2e-26625687264Transcription factor MYC2
5gnj_M2e-26625687264Transcription factor MYC2
5gnj_N2e-26625687264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1612620RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8330460.0CT833046.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA221E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621308.10.0transcription factor bHLH13
TrEMBLA0A0D9Y5R90.0A0A0D9Y5R9_9ORYZ; Uncharacterized protein
STRINGOGLUM01G09830.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-70bHLH family protein