PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G09910.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 942aa MW: 102799 Da PI: 5.9611

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G09910.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	595	646	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ OGLUM01G09910.1 595 AEKTISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 646 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.541	585	666	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-26	598	646	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.35E-21	838	933	No hit	No description
PROSITE profile	PS51745	18.698	848	930	IPR000270	PB1 domain
Pfam	PF00564	1.8E-15	848	929	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.1E-25	848	929	No hit	No description
SMART	SM00666	7.4E-25	848	930	IPR000270	PB1 domain
CDD	cd06407	1.76E-33	849	929	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MEVDPSSSSP GAGEGGGGGI GGGGGDLWPF DSLTTSLLFS SVSASPQPLP ASSSSWLTPP 60 SPLWLFDERQ LLPLDMGAPA APATAPPAEA AAVVEEVHRT RSGNSDTTSK RVDQINSKWQ 120 FHLSIDDNTD SSCLFKERLT QALRYFKEST DQHLLVQVWA PVKSGDRYVL TTSGQPFVLD 180 QQSIGLLQYR AVSMMYMFSV DGENAGDLGL PGRVYKQKVP EWTPNVQYYS STEYPRLNHA 240 ISYNVHGTVA LPVFDPSVQN CIAVVELIMT SKKINYAGEV DKVCKALEAV NLKSTEILDH 300 PNVQICNEGR QSALVEILEI LTVVCEEHKL PLAQTWVPCK YRSVLAHGGG VKKSCLSFDG 360 SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQKGQGV SGKAFIYRRP CFSKDISQFC 420 KLEYPLVHYA RMFGLAGCFA ICLQSMYTGD DDYILEFFLP PNCRNEDDQN ALLESILARM 480 KKCLRTLKVV GNGDTNEVCL QISNVLIIET EDLKTNVHFE NSEGCFRESP ESNGSQRAHE 540 VDNDGNKVSI MSERHLLADD NSQNNGASVG RPNGSGASDS LHKSNKPPER RRGKAEKTIS 600 LDVLQQYFSG SLKNAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKQVIESV 660 QGSDAAFNLT SITGPLPIPV GPSSDSQNLE KASPNKVAEL SNLAVEGDRD SSLQKPIEND 720 GNLAILMSQQ GFIDANNNLQ LEADKASHSR SSSGEGSINS RTSEASCQGS PANQTFVCKP 780 IASTFAEPQL IPEAFTKEPF QEPALPLSRM LIEDSGSSKD LKNLFTSAVD QPFLARSSNL 840 ALMQNSGTVT IKASFKEDIV RFRFPCSGSV TALKDEVAKR LRMDVGMFDI KYLDDDHEWV 900 KLACNADLEE CMEISRHSGS HVIRLLVSDV AAHLGSSCGS SG

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MEVDPSSSSP GAGEGGGGGI GGGGGDLWPF DSLTTSLLFS SVSASPQPLP ASSSSWLTPP  60
SPLWLFDERQ LLPLDMGAPA APATAPPAEA AAVVEEVHRT RSGNSDTTSK RVDQINSKWQ  120
FHLSIDDNTD SSCLFKERLT QALRYFKEST DQHLLVQVWA PVKSGDRYVL TTSGQPFVLD  180
QQSIGLLQYR AVSMMYMFSV DGENAGDLGL PGRVYKQKVP EWTPNVQYYS STEYPRLNHA  240
ISYNVHGTVA LPVFDPSVQN CIAVVELIMT SKKINYAGEV DKVCKALEAV NLKSTEILDH  300
PNVQICNEGR QSALVEILEI LTVVCEEHKL PLAQTWVPCK YRSVLAHGGG VKKSCLSFDG  360
SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQKGQGV SGKAFIYRRP CFSKDISQFC  420
KLEYPLVHYA RMFGLAGCFA ICLQSMYTGD DDYILEFFLP PNCRNEDDQN ALLESILARM  480
KKCLRTLKVV GNGDTNEVCL QISNVLIIET EDLKTNVHFE NSEGCFRESP ESNGSQRAHE  540
VDNDGNKVSI MSERHLLADD NSQNNGASVG RPNGSGASDS LHKSNKPPER RRGKAEKTIS  600
LDVLQQYFSG SLKNAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKQVIESV  660
QGSDAAFNLT SITGPLPIPV GPSSDSQNLE KASPNKVAEL SNLAVEGDRD SSLQKPIEND  720
GNLAILMSQQ GFIDANNNLQ LEADKASHSR SSSGEGSINS RTSEASCQGS PANQTFVCKP  780
IASTFAEPQL IPEAFTKEPF QEPALPLSRM LIEDSGSSKD LKNLFTSAVD QPFLARSSNL  840
ALMQNSGTVT IKASFKEDIV RFRFPCSGSV TALKDEVAKR LRMDVGMFDI KYLDDDHEWV  900
KLACNADLEE CMEISRHSGS HVIRLLVSDV AAHLGSSCGS SG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067319	0.0	AK067319.1 Oryza sativa Japonica Group cDNA clone:J013106K21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613020.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A0D9Y5S9	0.0	A0A0D9Y5S9_9ORYZ; Uncharacterized protein
STRING	OGLUM01G09910.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7