PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G10550.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 219aa MW: 23615.7 Da PI: 10.7326

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G10550.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	64.6	3.7e-20	1	76	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...........k 89 ++a+c a +F+L++ LG+++d++t++WLlqqa+ ai + tgt++++ + + +++ + +++++ + OGLUM01G10550.1 1 MPALCVAWIFQLTRDLGHKSDGETVQWLLQQAELAIVATTGTGTIPVGGA-DRQQEDALPAEQIDavagepspcgrR 76 9*****************************************77777333.11111111112222333333334441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-14	1	55	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	16.587	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MPALCVAWIF QLTRDLGHKS DGETVQWLLQ QAELAIVATT GTGTIPVGGA DRQQEDALPA 60 EQIDAVAGEP SPCGRRGRRS SPLRRVPASS GGPHTSHASG PSPGRALFGE REGGGERRVV 120 EERKNRNATY ILKMAQPSGI IVFLRSSPSP RRMQPAARHT FCSLFLQFSG NCGWVANPIS 180 NSAFPRAHRH THPATAAAAT TTTTRPPWTK EMRRESCCG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007789	1e-123	AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence.
GenBank	AP003074	1e-123	AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10.
GenBank	AP014957	1e-123	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9Y604	1e-159	A0A0D9Y604_9ORYZ; Uncharacterized protein
STRING	OGLUM01G10550.1	1e-159	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-20	TCP family protein