PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G10890.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 562aa    MW: 62404.4 Da    PI: 8.6921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G10890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.9e-08464485627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C++f rtGtCk+Gd+C++ H++
  OGLUM01G10890.1 464 CQHFVRTGTCKFGDSCRYFHPK 485
                      ********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.202.0E-1548106No hitNo description
CDDcd14137049306No hitNo description
SuperFamilySSF561122.29E-7853329IPR011009Protein kinase-like domain
PfamPF000691.3E-654106IPR000719Protein kinase domain
SMARTSM002202.0E-6854303IPR000719Protein kinase domain
PROSITE profilePS5001133.91254303IPR000719Protein kinase domain
PROSITE patternPS0010706084IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.104.3E-59110315No hitNo description
PfamPF000699.0E-47115303IPR000719Protein kinase domain
PROSITE patternPS001080140152IPR008271Serine/threonine-protein kinase, active site
SMARTSM004519.2E-4398433IPR003604Zinc finger, U1-type
SuperFamilySSF576673.97E-13399441No hitNo description
PfamPF062206.2E-9400432IPR013085Zinc finger, U1-C type
SMARTSM003561.1E-4460485IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6462485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5463483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831463486IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6463485IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0042538Biological Processhyperosmotic salinity response
GO:0046777Biological Processprotein autophosphorylation
GO:1901002Biological Processpositive regulation of response to salt stress
GO:0005829Cellular Componentcytosol
GO:0003676Molecular Functionnucleic acid binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MGAEKLPDQM HDLKIRDDKE VEATIINGKG TETGHIIVTT TGGRNGQPKQ TVSYMAERIV  60
GQGSFGIVFQ AKCLETGETV AIKKVLQDKR YKNRELQTMR LLDHPNHYNK MNQRMPLIYV  120
KLYMYQICRA LAYIHNSIGV CHRDIKPQNL LVNPHTHQLK LCDFGSAKVL VKGEPNISYI  180
CSRYYRAPEL IFGATEYTTA IDIWSAGCVL AELMLGQPLF PGESGVDQLV EIIKVLGTPT  240
REEIKCMNPN YTEFKFPQIK AHPWHKVFHK RLPPEAVDLV SRLLQYSPNL RCTAVEALVH  300
PFFDELRDPN ARLPNGRFLP PLFNFKPHEL KGIPSDIMAK LIPEHVKKQC SYAGSLFAQQ  360
QKLLEGEDQN SEELSRERGE AAEGGKKGGG GRGSEMPLGK YYCDYCEKQF QDTPAARKRH  420
LDGAQHHRAR ALWYDAVRRQ ELHGGGGGAP PLLHQPGAAA IGVCQHFVRT GTCKFGDSCR  480
YFHPKPPPAN PGPAPSGPVS GPMAQQSNIQ GSQPNFVGYQ AADGSSFSGN ILGGHTSWGN  540
LPPSLRPPPE GGYPPFPFVD WG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q5k_A1e-1483835134381Glycogen synthase kinase-3 beta
1q5k_B1e-1483835134381Glycogen synthase kinase-3 beta
1r0e_A1e-1483835111358Glycogen synthase kinase-3 beta
1r0e_B1e-1483835111358Glycogen synthase kinase-3 beta
3i4b_A1e-1483835134381Glycogen synthase kinase-3 beta
3i4b_B1e-1483835134381Glycogen synthase kinase-3 beta
3l1s_A1e-1483835134381Glycogen synthase kinase-3 beta
3l1s_B1e-1483835134381Glycogen synthase kinase-3 beta
4iq6_A1e-1483835146393Glycogen synthase kinase-3 beta
4iq6_B1e-1483835146393Glycogen synthase kinase-3 beta
6gjo_A1e-1483835134381Glycogen synthase kinase-3 beta
6gjo_B1e-1483835134381Glycogen synthase kinase-3 beta
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383390GGKKGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0596210.0AB059621.1 Oryza sativa OSKgamma mRNA for shaggy-related protein kinase gamma, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610903.10.0shaggy-related protein kinase alpha
SwissprotP511390.0MSK3_MEDSA; Glycogen synthase kinase-3 homolog MsK-3
TrEMBLA0A0D9Y6460.0A0A0D9Y646_9ORYZ; Uncharacterized protein
STRINGOGLUM01G10890.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-23C3H family protein
Publications ? help Back to Top
  1. Pay A, et al.
    The MsK family of alfalfa protein kinase genes encodes homologues of shaggy/glycogen synthase kinase-3 and shows differential expression patterns in plant organs and development.
    Plant J., 1993. 3(6): p. 847-56
    [PMID:8401615]